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Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
THCA rs7027030 chr9:100550455 A/C MALL chr2:110841447-110874143:- 0.29 5.91 6.44E-9 Box Plot
THCA rs7027030 chr9:100550455 A/C NKX6-1 chr4:85413140-85419603:- 0.49 8.55 1.71E-16 Box Plot
THCA rs7027030 chr9:100550455 A/C PLCE1 chr10:95790569-96092580:+ 0.27 6.15 1.6E-9 Box Plot
THCA rs7027030 chr9:100550455 A/C TTC8 chr14:89290497-89347422:+ 0.24 5.97 4.67E-9 Box Plot
THCA rs7027221 chr9:100662379 T/C FAM81A chr15:59664892-59815748:+ -0.25 -6.01 3.68E-9 Box Plot
THCA rs7028661 chr9:100538470 A/G BMPR1A chr10:88516358-88692595:+ -0.23 -6.01 3.77E-9 Box Plot
THCA rs7028661 chr9:100538470 A/G CLDN2 chrX:106143394-106174091:+ 0.27 6.14 1.77E-9 Box Plot
THCA rs7028661 chr9:100538470 A/G EML5 chr14:89078775-89259096:- 0.3 6.89 1.76E-11 Box Plot
THCA rs7028661 chr9:100538470 A/G EPDR1 chr7:37723446-37991543:+ 0.31 6.8 3.13E-11 Box Plot
THCA rs7028661 chr9:100538470 A/G GGT5 chr22:24615622-24641110:- 0.26 5.98 4.36E-9 Box Plot
THCA rs7028661 chr9:100538470 A/G LRRC42 chr1:54411750-54433841:+ -0.24 -6.3 6.82E-10 Box Plot
THCA rs7028661 chr9:100538470 A/G NKX6-1 chr4:85413140-85419603:- 0.5 8.61 1.03E-16 Box Plot
THCA rs7028661 chr9:100538470 A/G PLCE1 chr10:95790569-96092580:+ 0.28 6.43 3.1E-10 Box Plot
THCA rs7030241 chr9:100550375 T/A BMPR1A chr10:88516358-88692595:+ -0.24 -6.19 1.26E-9 Box Plot
THCA rs7030241 chr9:100550375 T/A CLDN2 chrX:106143394-106174091:+ 0.26 6.08 2.48E-9 Box Plot